PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2DN0K
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 212aa    MW: 24350.9 Da    PI: 9.5374
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2DN0KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.4e-077695120
                 EEETTTTEEESSHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                 ++Cp C+k+F+r  nL+ H+
  Aradu.2DN0K 76 FSCPVCPKTFNRYNNLQMHM 95
                 89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-67199No hitNo description
Gene3DG3DSA:3.30.160.601.1E-57695IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.86676103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNQKQLEPLP LLSSFLGSST CSSSELNQNL KEDVTVALHI GLPDNSHDNQ NVEPLQAPNN  60
YWIPTEEQII IGFSHFSCPV CPKTFNRYNN LQMHMWGHGS EYRRGPESLK RTHPRPLLEI  120
ACYCCKGGCK NNIEHPRAKP LKDFRTLQTH YKRKHGPKPF SCRKCAKNLA VKGDWRTHEK  180
NCGKRWLCLC GSDFKHKRSL KDHIKAFGFG HT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ESLKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957769.11e-160PREDICTED: protein TRANSPARENT TESTA 1-like, partial
SwissprotQ8VWG37e-94TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A151TZS41e-127A0A151TZS4_CAJCA; Protein TRANSPARENT TESTA 1
STRINGGLYMA14G35140.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.17e-94C2H2 family protein